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Detection of Two Orchid Viruses Using Quartz Crystal Microbalance-Based DNA Biosensors

June 2002 , Volume 92 , Number  6
Pages  654 - 658

Alvin Jin-Cherng Eun , Liqun Huang , Fook-Tim Chew , Sam Fong-Yau Li , and Sek-Man Wong

First and fifth authors: Department of Biological Sciences; second and fourth authors: Department of Chemistry; third author: Department of Pediatrics; and fourth author: Institute of Materials Research and Engineering, National University of Singapore, Kent Ridge, Singapore 117543

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Accepted for publication 6 March 2002.

We have developed a piezoelectric DNA-sensor based on DNA-RNA hybridization for the detection of two orchid viruses, Cymbidium mosaic virus (CymMV) and Odontoglossum ringspot virus (ORSV). Specific oligonucleotide probes modified with a mercaptohexyl group at the 5′-phosphate end were directly immobilized onto 10-MHz AT-cut quartz crystal microbalance (QCM). QCMs coated with such oligonucleotide probes were exposed to test solutions containing viral RNA for hybridization. Various experimental conditions evaluated were (i) DNA probe coating concentration, (ii) sensitivity and specificity of the probes at different hybridization temperatures, and (iii) effects of incubation temperature on the hybridization time. The specific nucleotide probe-coated QCM-based DNA sensors were able to detect both CymMV and ORSV in quantities as low as approximately 1 ng in purified RNA preparations and 10 ng in the crude sap of infected orchids. This is the first application of a DNA biosensor for the detection of plant viruses.

© 2002 The American Phytopathological Society